Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
SKCM rs56282020 chr5:596701 T/C 0 98 15.02 12 6.33 KM Plot
SKCM rs56321182 chr12:63392023 C/T 2.4E-7 100 15.13 14.3 8.8 KM Plot
SKCM rs56328416 chr5:591138 G/A 0 100 15.02 14.8 6.33 KM Plot
SKCM rs56350081 chr5:583198 G/A 0 100 15.02 14.8 6.33 KM Plot
SKCM rs57306627 chr5:597643 T/C 0 98 15.02 12 6.33 KM Plot
SKCM rs57857886 chr18:71939275 G/T 0.000111 100 15.57 12.6 14.7 KM Plot
SKCM rs58015612 chr5:580665 A/T 0 100 15.02 14.8 6.33 KM Plot
SKCM rs58363484 chr2:65761402 T/C 5.12E-7 100 15.3 13.9 8.8 KM Plot
SKCM rs58489175 chr7:127674026 A/G 3.86E-5 101 14.8 16.28 10.52 KM Plot
SKCM rs58545487 chr1:3535556 C/T 4.08E-8 97 16.33 14.9 8.8 KM Plot
SKCM rs58599998 chr5:596087 A/G 0 98 15.02 12 6.33 KM Plot
SKCM rs58821476 chr12:63389425 T/C 2.4E-7 100 15.13 14.3 8.8 KM Plot
SKCM rs58871810 chr12:63383210 T/G 2.4E-7 100 15.13 14.3 8.8 KM Plot
SKCM rs589691 chr11:64525216 C/T 5.64E-7 101 8.8 15.68 14.75 KM Plot
SKCM rs593394 chr11:64546991 C/T 6.62E-7 100 14.73 15.73 8.8 KM Plot